PhD position: development of a public web database for arachnid toxin biodata | UniSC | University of the Sunshine Coast, Queensland, Australia

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PhD position: development of a public web database for arachnid toxin biodata

Applications recently closed - contact A/Prof Volker Herzig - vherzig@usc.edu.au immediately with questions or expression of interest

The ArachnoServer web database has been introduced in 2009 (BMC Genomics 10: 375) and two more updates followed in 2011 (Nucleic Acids Res: D653-D657) and 2018 (Bioinformatics 34: 1074-1076). It contains all published data on spider venom peptides and makes them easy and freely accessible for researchers around the world. Technical limitations of this legacy software have now required the database to be taken offline and a complete reprogramming will be required to future-proof the database for the coming decades. In addition, we plan to further expand the database by including published data of venom peptides from other arachnids such as scorpions, pseudoscorpions, and ticks. Furthermore, the functionality and degree of automation of ArachnoServer and the interoperability with other public databases might also be improved.

The PhD candidate working on this project will be responsible for development and administration of the ArachnoServer database for the duration of the project. A large team of scientific curators will advise on the features and functionality of the database. The successful candidate will receive a PhD scholarship for 3 years (plus 6 months extension if required) and a tuition fee waiver for international students. The team of experienced PhD supervisors include A/Prof Volker Herzig (UniSC) and Prof Glenn F. King (UQ) for the toxinological part and Dr. Cameron Hyde (QCIF) for the ICT part of the project.

We are looking for an enthusiastic ICT graduate with demonstrated experience in software engineering and database management. The candidate should be able to work independently, but also within the larger team of database curators, who are responsible for adding the biological content into ArachnoServer. A strong applicant will be an independent learner with proven skills in Python (or other suitable language) and an interest in web development. Familiarity with Linux systems, SQL databases, web frameworks and data manipulation will also provide a distinct advantage.

Eligibility
  • Be accepted into a Doctor of Philosophy program at the University of the Sunshine Coast
Selection criteria

Criterion 1: Academic Achievement

Criterion 2: Research Capability

Eligible programs
Doctor of Philosophy
Number available
1
Value

1 - Tuition offset scholarship for up to 4 years (minimum total value A$66,000)

2 -  Living stipend of Aud $33,446.56 (2023 UniSC research rate) per annum tax-free, paid in fortnightly instalments. The rate is indexed annually commensurate with the RTP base stipend rate. 3 years coverage with the possibility of a 6-month extension in approved circumstances.

3 - Overseas Student Health Cover (international applicants) single cover for approx 57 Months